C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sodium channel, non-voltage-gated 1, gamma subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000300061 SCNN1G-001 ENSG00000166828 9606 + 16:23182715-23216883 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000300061
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000300061 0.403±0.00 0.104±0.00 4.096±0.00 0.110±0.00 0.120±0.11 0.269±0.11 0.018±0.00 22.088±0.00 0.170±0.16 3.549±2.53 0.133±0.00 0.131±0.07 0.499±0.50 0.035±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003CL CIL_0003CL_0001 CGP 16:23061406-23216883
CIL_0006D7 CIL_0006D7_0001 CGP 16:23182715-23381299

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005272 TAS:IEA sodium channel activity
GO:0005515 IPI protein binding
GO:0005886 TAS plasma membrane
GO:0005887 IDA integral component of plasma membrane
GO:0006814 TAS:IEA sodium ion transport
GO:0007588 TAS excretion
GO:0009897 IEA external side of plasma membrane
GO:0015280 IDA:IEA ligand-gated sodium channel activity
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0034220 TAS ion transmembrane transport
GO:0034706 IDA sodium channel complex
GO:0035725 IDA sodium ion transmembrane transport
GO:0050699 IPI WW domain binding
GO:0050891 IDA multicellular organismal water homeostasis
GO:0050896 IEA response to stimulus
GO:0050909 IEA sensory perception of taste
GO:0055078 IDA sodium ion homeostasis
GO:0055085 TAS transmembrane transport
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000000221 Scnn1g-001 protein_coding Mus_musculus 0 1901

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