C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006D7_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000166828-ENSG00000168447 CGP 9606 16:23182715-23381299
GeneTranscriptPositionBiotype
ENSG00000166828 (SCNN1G)
sodium channel, non-voltage-gated 1, gamma subunit 		ENST00000300061 (SCNN1G-001) 23182715-23216883 protein_coding
ENSG00000168447 (SCNN1B)
sodium channel, non-voltage-gated 1, beta subunit 		ENST00000307331 (SCNN1B-002) 23303973-23380801 protein_coding
ENST00000343070 (SCNN1B-001) 23302270-23381299 protein_coding
ENST00000564275 (SCNN1B-005) 23348592-23380803 nonsense_mediated_decay
ENST00000566441 (SCNN1B-004) 23355417-23372183 protein_coding
ENST00000566647 (SCNN1B-003) 23358202-23359379 processed_transcript
ENST00000566870 (SCNN1B-009) 23348795-23353244 retained_intron
ENST00000568085 (SCNN1B-006) 23348592-23380803 protein_coding
ENST00000568923 (SCNN1B-007) 23348592-23380803 protein_coding
ENST00000569789 (SCNN1B-008) 23278231-23352913 processed_transcript
CIL_0006D7_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000000216-ENSMUSG00000030873 CGP 10090 7:121734479-121918515
GeneTranscriptPositionBiotype
ENSMUSG00000000216 (Scnn1g)
sodium channel, nonvoltage-gated 1 gamma 		ENSMUST00000000221 (Scnn1g-001) 121734479-121768475 protein_coding
ENSMUSG00000030873 (Scnn1b)
sodium channel, nonvoltage-gated 1 beta 		ENSMUST00000033161 (Scnn1b-201) 121865111-121918515 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006D7_0001ENSG00000166828ENST00000300061ENSG00000168447ENST00000307331ENST00000343070ENST00000564275ENST00000566441ENST00000566647ENST00000566870ENST00000568085ENST00000568923ENST00000569789CIL_0006D7_0002ENSMUSG00000000216ENSMUST00000000221ENSMUSG00000030873ENSMUST00000033161
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006D7_0001ENSG00000166828ENST00000300061ENSG00000168447ENST00000307331ENST00000343070ENST00000564275ENST00000566441ENST00000566647ENST00000566870ENST00000568085ENST00000568923CIL_0006D7_0002ENSMUSG00000000216ENSMUST00000000221ENSMUSG00000030873ENSMUST00000033161
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000166828 ENST00000300061 0.403±0.00 0.104±0.00 4.096±0.00 0.110±0.00 0.120±0.11 0.269±0.11 0.018±0.00 22.088±0.00 0.170±0.16 3.549±2.53 0.133±0.00 0.131±0.07 0.499±0.50 0.035±0.01
ENSG00000168447 ENST00000307331 N/A N/A 1.321±0.00 N/A N/A N/A 0.122±0.00 N/A 0.822±0.00 0.336±0.00 N/A N/A N/A N/A
ENST00000343070 59.498±0.00 2.967±0.00 N/A N/A 1.769±0.00 4.557±3.32 N/A 13.343±0.00 0.056±0.00 20.685±0.00 1.843±0.00 1.077±0.49 7.181±4.81 0.535±0.35
ENST00000564275 N/A N/A N/A N/A N/A N/A 0.123±0.00 N/A N/A N/A N/A N/A N/A 0.071±0.00
ENST00000566441 N/A N/A N/A 0.125±0.00 N/A N/A 0.057±0.00 N/A N/A N/A N/A 0.440±0.00 N/A N/A
ENST00000566647 0.058±0.00 N/A N/A N/A N/A 0.353±0.00 N/A 0.087±0.00 N/A N/A N/A N/A N/A N/A
ENST00000566870 N/A N/A N/A 0.035±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568085 N/A N/A N/A N/A 0.175±0.00 1.527±0.00 N/A N/A N/A 0.906±0.00 N/A N/A N/A N/A
ENST00000568923 N/A N/A N/A N/A N/A N/A 0.104±0.00 N/A N/A 1.723±0.00 N/A N/A N/A N/A
ENST00000569789 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000000216 ENSMUST00000000221 0.114±0.01 0.041±0.02 14.069±1.36 0.016±0.01 0.188±0.04 1.752±0.26 0.160±0.02 15.637±1.25 0.008±0.00 42.069±12.53 0.026±0.01 0.065±0.03 0.883±0.35 0.024±0.01
ENSMUSG00000030873 ENSMUST00000033161 1.416±1.18 0.250±0.06 5.190±0.20 0.059±0.01 2.381±0.52 9.222±3.50 0.039±0.01 28.421±5.89 0.023±0.02 61.820±10.33 0.060±0.02 0.982±0.70 10.923±3.33 0.127±0.07

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