C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: post-GPI attachment to proteins 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000300730 PGAP2-003 ENSG00000148985 9606 + 11:3797819-3826352 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005K0 CIL_0005K0_0001 CGP 11:3665587-3797792
CIL_0005K9 CIL_0005K9_0001 CGP 11:3671083-3826371
CIL_0005KW CIL_0005KW_0001 CGP 11:3797724-3840983

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 ISS Golgi membrane
GO:0005789 ISS endoplasmic reticulum membrane
GO:0006506 ISS GPI anchor biosynthetic process
GO:0008565 ISS protein transporter activity
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000120879 Pgap2-029 protein_coding Mus_musculus 0 1050
ENSMUST00000156529 Pgap2-002 protein_coding Mus_musculus 0 1050
ENSMUST00000033292 Pgap2-003 protein_coding Mus_musculus 0 994
ENSMUST00000150891 Pgap2-005 processed_transcript Mus_musculus 0 839
ENSMUST00000134621 Pgap2-025 retained_intron Mus_musculus 0 811
ENSMUST00000120119 Pgap2-007 protein_coding Mus_musculus 0 809
ENSMUST00000137303 Pgap2-027 protein_coding Mus_musculus 0 806
ENSMUST00000153020 Pgap2-013 protein_coding Mus_musculus 0 782
ENSMUST00000138479 Pgap2-014 protein_coding Mus_musculus 0 780
ENSMUST00000119816 Pgap2-024 nonsense_mediated_decay Mus_musculus 0 756
ENSMUST00000145352 Pgap2-023 nonsense_mediated_decay Mus_musculus 0 754
ENSMUST00000140058 Pgap2-022 nonsense_mediated_decay Mus_musculus 0 536
ENSMUST00000143759 Pgap2-018 retained_intron Mus_musculus 0 514
ENSMUST00000127804 Pgap2-011 retained_intron Mus_musculus 0 514
ENSMUST00000142873 Pgap2-021 protein_coding Mus_musculus 0 497
ENSMUST00000133311 Pgap2-028 processed_transcript Mus_musculus 0 483
ENSMUST00000129340 Pgap2-006 nonsense_mediated_decay Mus_musculus 0 481
ENSMUST00000138753 Pgap2-020 protein_coding Mus_musculus 0 448
ENSMUST00000126914 Pgap2-016 protein_coding Mus_musculus 0 422
ENSMUST00000143541 Pgap2-012 protein_coding Mus_musculus 0 339
ENSMUST00000140631 Pgap2-030 protein_coding Mus_musculus 7e-37 159

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