C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ARL2-SNX15 readthrough (NMD candidate)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000301886 ARL2-SNX15-001 ENSG00000273003 9606 + 11:65014182-65040570 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonMuscleOvaryENST00000301886
Transcript ID Adrenal Brain Breast Colon Muscle Ovary
ENST00000301886 7.196±0.00 5.827±0.00 1.170±0.00 5.330±4.43 9.044±0.00 3.455±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003924 IEA GTPase activity
GO:0004871 IEA signal transducer activity
GO:0005525 IEA GTP binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0007186 IEA G-protein coupled receptor signaling pathway
GO:0007264 IEA small GTPase mediated signal transduction
GO:0019001 IEA guanyl nucleotide binding
GO:0031683 IEA G-protein beta/gamma-subunit complex binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000025702 Snx15-001 protein_coding Mus_musculus 0 1035
ENSMUST00000154601 Snx15-002 protein_coding Mus_musculus 0 719
ENSMUST00000124964 Snx15-003 processed_transcript Mus_musculus 0 688
ENSMUST00000025893 Arl2-001 protein_coding Mus_musculus 0 516
ENSMUST00000134821 Arl2-002 retained_intron Mus_musculus 0 512
ENSMUST00000123193 Arl2-003 retained_intron Mus_musculus 0 379
ENSMUST00000129076 Snx15-004 retained_intron Mus_musculus 9.80909e-45 185
ENSMUST00000134150 Batf2-002 processed_transcript Mus_musculus 0.00000000000002 86
ENSMUST00000124171 Snx15-007 retained_intron Mus_musculus 0 213

Loading