C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sorting nexin 15
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000025702 Snx15-001 ENSMUSG00000024787 10090 - 19:6119399-6128304 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000025702
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000025702 8.071±1.01 5.586±1.33 8.938±1.32 11.035±4.11 6.724±1.98 11.029±1.64 6.427±0.51 8.330±1.23 17.922±13.52 7.408±0.50 4.198±0.36 6.014±2.29 6.768±3.83 3.818±1.59

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005730 IEA nucleolus
GO:0005737 IEA cytoplasm
GO:0008150 ND biological_process
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0031410 IEA cytoplasmic vesicle
GO:0035091 IEA phosphatidylinositol binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000301886 ARL2-SNX15-001 nonsense_mediated_decay Homo_sapiens 0 1035
ENST00000352068 SNX15-002 protein_coding Homo_sapiens 0 719
ENST00000377244 SNX15-001 protein_coding Homo_sapiens 0 1035
ENST00000525648 SNX15-007 protein_coding Homo_sapiens 0 322
ENST00000526702 SNX15-003 retained_intron Homo_sapiens 0 715
ENST00000529673 SNX15-005 nonsense_mediated_decay Homo_sapiens 0 202

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