C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: NOP14 nucleolar protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000314262 NOP14-002 ENSG00000087269 9606 - 4:2937942-2963368 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonKidneyLiverMuscleOvaryPlacentaTestisENST00000314262
Transcript ID Adipose Bladder Brain Breast Colon Kidney Liver Muscle Ovary Placenta Testis
ENST00000314262 7.732±0.00 0.448±0.00 1.721±0.90 3.064±0.00 2.870±1.04 1.723±0.00 0.849±0.00 6.629±0.00 5.902±2.30 6.694±0.00 5.998±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00056S CIL_00056S_0001 CGP 4:2930561-2963385
CIL_00056M CIL_00056M_0001 CGP 4:2937933-3040747

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000447 ISS endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000462 ISS maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000472 ISS endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000480 ISS endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0005634 IDA nucleus
GO:0005730 ISS nucleolus
GO:0005739 ISS mitochondrion
GO:0006364 ISS rRNA processing
GO:0016020 IDA membrane
GO:0019899 IPI enzyme binding
GO:0030515 ISS snoRNA binding
GO:0030686 ISS 90S preribosome
GO:0030692 ISS Noc4p-Nop14p complex
GO:0032040 ISS:IEA small-subunit processome
GO:0042274 ISS ribosomal small subunit biogenesis
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000041364 Nop14-001 protein_coding Mus_musculus 0 2176
ENSMUST00000152393 Nop14-002 processed_transcript Mus_musculus 0 366

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