C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SEC24 family member A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000322887 SEC24A-002 ENSG00000113615 9606 + 5:134648824-134693698 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089W CIL_00089W_0001 VISTA 5:134136326-134739629
CIL_0007JT CIL_0007JT_0002 UCNEbase 5:134524545-135264654
CIL_00062X CIL_00062X_0002 CGP 5:134601144-134727823
CIL_00062W CIL_00062W_0002 CGP 5:134648789-134752160

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 TAS Golgi membrane
GO:0002474 TAS antigen processing and presentation of peptide antigen via MHC class I
GO:0003674 ND molecular_function
GO:0005789 TAS endoplasmic reticulum membrane
GO:0005829 TAS cytosol
GO:0006886 IEA intracellular protein transport
GO:0006888 TAS:IEA ER to Golgi vesicle-mediated transport
GO:0008270 IEA zinc ion binding
GO:0012507 TAS ER to Golgi transport vesicle membrane
GO:0018279 TAS protein N-linked glycosylation via asparagine
GO:0019886 TAS antigen processing and presentation of exogenous peptide antigen via MHC class II
GO:0030127 IEA COPII vesicle coat
GO:0043687 TAS post-translational protein modification
GO:0044267 TAS cellular protein metabolic process
GO:0044281 TAS small molecule metabolic process
GO:0048208 TAS COPII vesicle coating
GO:0061024 TAS membrane organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000109097 Sec24a-001 protein_coding Mus_musculus 0 1960
ENSMUST00000038210 Sec24a-006 protein_coding Mus_musculus 0 1947
ENSMUST00000064297 Sec24a-004 protein_coding Mus_musculus 0 1869
ENSMUST00000109092 Sec24a-005 protein_coding Mus_musculus 0 1857
ENSMUST00000147255 Sec24a-003 retained_intron Mus_musculus 0 1375
ENSMUST00000154325 Sec24a-002 retained_intron Mus_musculus 0 580

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