C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: contactin 2 (axonal)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000331830 CNTN2-001 ENSG00000184144 9606 + 1:205043197-205078499 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENST00000331830
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENST00000331830 0.324±0.00 0.007±0.00 60.207±56.67 0.046±0.00 0.490±0.45 0.042±0.02 0.035±0.00 0.008±0.00 0.058±0.04 0.032±0.00 0.020±0.00 4.594±1.33

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00057C CIL_00057C_0002 CGP 1:204828651-205078499

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000226 IEA microtubule cytoskeleton organization
GO:0001764 IEA neuron migration
GO:0001948 IEA glycoprotein binding
GO:0005515 IEA protein binding
GO:0005886 ISS plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0007155 IEA cell adhesion
GO:0007411 TAS axon guidance
GO:0007413 IEA axonal fasciculation
GO:0007612 IEA learning
GO:0007628 IEA adult walking behavior
GO:0008076 IEA voltage-gated potassium channel complex
GO:0009986 IEA cell surface
GO:0010769 IEA regulation of cell morphogenesis involved in differentiation
GO:0010954 IEA positive regulation of protein processing
GO:0021853 IEA cerebral cortex GABAergic interneuron migration
GO:0022010 IEA central nervous system myelination
GO:0030246 IEA carbohydrate binding
GO:0030424 IEA axon
GO:0031133 IEA regulation of axon diameter
GO:0031175 IEA neuron projection development
GO:0031225 IEA anchored component of membrane
GO:0031623 IEA receptor internalization
GO:0033268 ISS node of Ranvier
GO:0034613 ISS cellular protein localization
GO:0042802 TAS identical protein binding
GO:0043005 IEA neuron projection
GO:0043025 IEA neuronal cell body
GO:0043209 ISS myelin sheath
GO:0043621 IEA protein self-association
GO:0044224 ISS juxtaparanode region of axon
GO:0045163 ISS clustering of voltage-gated potassium channels
GO:0045202 ISS synapse
GO:0045665 IEA negative regulation of neuron differentiation
GO:0048168 IEA regulation of neuronal synaptic plasticity
GO:0048710 IEA regulation of astrocyte differentiation
GO:0060168 IEA positive regulation of adenosine receptor signaling pathway
GO:0071205 IEA protein localization to juxtaparanode region of axon
GO:0071206 IEA establishment of protein localization to juxtaparanode region of axon
GO:0097090 IMP presynaptic membrane organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000086521 Cntn2-001 protein_coding Mus_musculus 0 3494
ENSMUST00000186487 Cntn2-002 retained_intron Mus_musculus 0 3158
ENSMUST00000190601 Cntn2-003 retained_intron Mus_musculus 0 2069
ENSMUST00000188065 Cntn2-004 nonsense_mediated_decay Mus_musculus 0 1862
ENSMUST00000188143 Cntn2-008 retained_intron Mus_musculus 0 540

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