C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: contactin 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000086521 Cntn2-001 ENSMUSG00000053024 10090 - 1:132511782-132542939 protein_coding

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000086521
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000086521 0.031±0.00 0.077±0.00 20.367±5.58 0.167±0.02 0.061±0.03 1.136±0.21 0.013±0.00 0.004±0.00 0.026±0.01 0.410±0.22 0.028±0.00 0.020±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000226 IMP microtubule cytoskeleton organization
GO:0001764 IMP neuron migration
GO:0001948 IDA glycoprotein binding
GO:0005515 IPI protein binding
GO:0007155 IEA cell adhesion
GO:0007411 IGI axon guidance
GO:0007413 IMP axonal fasciculation
GO:0007612 IMP learning
GO:0007628 IMP adult walking behavior
GO:0008076 IDA voltage-gated potassium channel complex
GO:0009986 IDA cell surface
GO:0010769 IMP regulation of cell morphogenesis involved in differentiation
GO:0010954 IDA positive regulation of protein processing
GO:0021853 IMP cerebral cortex GABAergic interneuron migration
GO:0022010 IMP central nervous system myelination
GO:0030246 IDA carbohydrate binding
GO:0030424 IDA axon
GO:0031133 IMP regulation of axon diameter
GO:0031175 IGI neuron projection development
GO:0031225 IEA anchored component of membrane
GO:0031623 IDA receptor internalization
GO:0033268 IDA node of Ranvier
GO:0034613 IMP cellular protein localization
GO:0043005 IDA neuron projection
GO:0043025 IDA neuronal cell body
GO:0043209 IDA myelin sheath
GO:0043621 IPI protein self-association
GO:0044224 IDA juxtaparanode region of axon
GO:0045163 IMP clustering of voltage-gated potassium channels
GO:0045665 IGI negative regulation of neuron differentiation
GO:0048168 IMP regulation of neuronal synaptic plasticity
GO:0048710 IMP regulation of astrocyte differentiation
GO:0060168 IMP positive regulation of adenosine receptor signaling pathway
GO:0071205 IMP protein localization to juxtaparanode region of axon
GO:0071206 IDA establishment of protein localization to juxtaparanode region of axon
GO:0097090 ISS presynaptic membrane organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000055035 CABZ01012080.1-201 protein_coding Danio_rerio 0.000000000002 81
ENST00000331830 CNTN2-001 protein_coding Homo_sapiens 0 3494
ENST00000481872 CNTN2-002 retained_intron Homo_sapiens 0 3029
ENST00000525433 CNTN2-007 retained_intron Homo_sapiens 0 244
ENST00000527340 CNTN2-005 retained_intron Homo_sapiens 0 555
ENST00000530117 CNTN2-003 retained_intron Homo_sapiens 0 929
ENST00000530594 CNTN2-006 retained_intron Homo_sapiens 0 200

Loading