C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: neuronal pentraxin receptor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000333039 NPTXR-001 ENSG00000221890 9606 - 22:38818452-38843982 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000333039
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000333039 1.147±0.00 3.508±0.00 0.078±0.00 30.696±22.30 1.622±1.45 5.531±0.00 3.279±2.83 0.969±0.93 0.300±0.10 0.995±0.73 0.164±0.14 2.616±3.01 0.313±0.08 1.456±1.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005NI CIL_0005NI_0001 CGP 22:38778508-38843982
CIL_0005NH CIL_0005NH_0001 CGP 22:38818452-38872314

Gene Ontology

GO IDEvidence TypeGO Description
GO:0016021 IEA integral component of membrane
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000175858 Nptxr-201 protein_coding Mus_musculus 0 1934
ENSMUST00000023057 Nptxr-001 protein_coding Mus_musculus 0 1934
ENSMUST00000089299 Npcd-001 protein_coding Mus_musculus 0 981
ENSMUST00000023060 Npcd-002 protein_coding Mus_musculus 0 976
ENSMUST00000125283 Nptxr-002 processed_transcript Mus_musculus 0 603

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