C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 18kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000338366 TAF13-002 ENSG00000197780 9606 - 1:109064140-109076002 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000338366
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000338366 12.505±0.00 6.122±0.00 15.531±4.41 10.090±4.82 7.779±0.10 6.780±2.06 8.113±3.82 8.087±1.98 3.544±1.75 6.847±1.88 6.359±3.48 7.072±0.79 6.792±1.68

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098X CIL_00098X_0001 VISTA 1:108953074-109556228
CIL_00099A CIL_00099A_0001 VISTA 1:108974252-109576283

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 NAS sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005669 IDA transcription factor TFIID complex
GO:0005730 IDA nucleolus
GO:0006352 NAS DNA-templated transcription, initiation
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006366 IC:IEA transcription from RNA polymerase II promoter
GO:0006367 IC transcription initiation from RNA polymerase II promoter
GO:0006368 TAS transcription elongation from RNA polymerase II promoter
GO:0008022 IPI protein C-terminus binding
GO:0010467 TAS gene expression
GO:0016032 TAS viral process
GO:0046982 IEA protein heterodimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000143054 Taf13-001 protein_coding Mus_musculus 0 501
ENSMUST00000117979 Gm11189-001 processed_pseudogene Mus_musculus 0 494
ENSMUST00000131814 Taf13-002 processed_transcript Mus_musculus 0 488
ENSMUST00000056292 Taf13-003 processed_transcript Mus_musculus 0 464

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