C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CREB regulated transcription coactivator 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000338797 CRTC1-001 ENSG00000105662 9606 + 19:18683678-18782333 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonHeartKidneyLiverLungMuscleOvaryENST00000338797
Transcript ID Brain Colon Heart Kidney Liver Lung Muscle Ovary
ENST00000338797 2.087±1.57 1.400±0.00 0.282±0.00 0.080±0.00 0.028±0.00 0.238±0.00 1.272±0.00 1.438±1.35

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004NM CIL_0004NM_0002 CGP 19:18636965-18782333
CIL_0004NL CIL_0004NL_0002 CGP 19:18683677-18791314

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005886 IDA plasma membrane
GO:0006351 IEA transcription, DNA-templated
GO:0007613 IEA memory
GO:0008140 IDA cAMP response element binding protein binding
GO:0016032 IEA viral process
GO:0032793 ISS positive regulation of CREB transcription factor activity
GO:0043153 ISS entrainment of circadian clock by photoperiod
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0051289 IEA protein homotetramerization
GO:0060081 IEA membrane hyperpolarization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000076615 Crtc1-001 protein_coding Mus_musculus 0 1648
ENSMUST00000142769 Crtc1-005 retained_intron Mus_musculus 0 741
ENSMUST00000125273 Crtc1-002 retained_intron Mus_musculus 0 448
ENSMUST00000125613 Crtc1-004 retained_intron Mus_musculus 0 381
ENSDART00000113356 crtc1a-201 protein_coding Danio_rerio 1.4013e-45 191

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