C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: NHL repeat containing E3 ubiquitin protein ligase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000340650 NHLRC1-001 ENSG00000187566 9606 - 6:18121419-18122606 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000340650
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000340650 0.292±0.00 0.704±0.00 1.414±0.88 1.111±0.92 0.201±0.14 0.228±0.19 0.494±0.00 0.918±0.35 0.184±0.12 2.241±0.00 1.478±0.00 0.694±0.06 0.637±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00090E CIL_00090E_0001 VISTA 6:17631749-18233261
CIL_0003RK CIL_0003RK_0001 CGP 6:17759183-18122606
CIL_0003RL CIL_0003RL_0001 CGP 6:18121419-18155074

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000209 IDA protein polyubiquitination
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005783 IEA endoplasmic reticulum
GO:0005829 TAS cytosol
GO:0005975 TAS carbohydrate metabolic process
GO:0005978 TAS glycogen biosynthetic process
GO:0006006 TAS glucose metabolic process
GO:0006914 IEA autophagy
GO:0008270 IEA zinc ion binding
GO:0016874 IEA ligase activity
GO:0031398 IEA positive regulation of protein ubiquitination
GO:0043161 IDA proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0044281 TAS small molecule metabolic process
GO:0048471 IEA perinuclear region of cytoplasm

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000052747 Nhlrc1-201 protein_coding Mus_musculus 0 1022

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