C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: microtubule-associated protein tau
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000340799 MAPT-202 ENSG00000186868 9606 + 17:45894382-46028334 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastHeartMusclePlacentaTestisENST00000340799
Transcript ID Adipose Adrenal Brain Breast Heart Muscle Placenta Testis
ENST00000340799 1.220±0.00 0.676±0.00 10.692±3.84 1.225±0.00 2.055±0.00 4.394±3.54 1.803±0.00 2.808±0.79

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004WG CIL_0004WG_0001 CGP 17:45844835-46028334

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000226 IDA microtubule cytoskeleton organization
GO:0005200 TAS structural constituent of cytoskeleton
GO:0005515 IPI protein binding
GO:0005829 TAS cytosol
GO:0005874 IEA microtubule
GO:0005875 TAS microtubule associated complex
GO:0005886 IDA plasma membrane
GO:0006915 TAS apoptotic process
GO:0006921 TAS cellular component disassembly involved in execution phase of apoptosis
GO:0008017 IDA microtubule binding
GO:0010506 IGI regulation of autophagy
GO:0015631 IEA tubulin binding
GO:0017124 IPI SH3 domain binding
GO:0019899 IPI enzyme binding
GO:0030424 IDA axon
GO:0030426 IDA growth cone
GO:0031113 NAS regulation of microtubule polymerization
GO:0031116 IDA positive regulation of microtubule polymerization
GO:0034185 IPI apolipoprotein binding
GO:0034399 IDA nuclear periphery
GO:0036464 IDA cytoplasmic ribonucleoprotein granule
GO:0045298 IDA tubulin complex
GO:0045773 IDA positive regulation of axon extension
GO:0048699 NAS generation of neurons
GO:0071813 IPI lipoprotein particle binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000106992 Mapt-001 protein_coding Mus_musculus 0 1328
ENSMUST00000100347 Mapt-007 protein_coding Mus_musculus 0 1147
ENSMUST00000106993 Mapt-006 protein_coding Mus_musculus 0 1138
ENSMUST00000106989 Mapt-003 protein_coding Mus_musculus 0 1057
ENSMUST00000106988 Mapt-002 protein_coding Mus_musculus 0 1057
ENSMUST00000144836 Mapt-009 processed_transcript Mus_musculus 0 571
ENSMUST00000126820 Mapt-010 processed_transcript Mus_musculus 0 448
ENSDART00000154226 maptb-005 protein_coding Danio_rerio 8.00001e-41 174
ENSDART00000130546 maptb-201 protein_coding Danio_rerio 1e-29 137
ENSDART00000155528 maptb-007 protein_coding Danio_rerio 1e-29 137
ENSDART00000156880 maptb-006 processed_transcript Danio_rerio 1e-29 137
ENSDART00000155490 maptb-001 protein_coding Danio_rerio 1e-29 137
ENSDART00000154818 maptb-004 protein_coding Danio_rerio 6e-22 111
ENSDART00000153613 maptb-002 protein_coding Danio_rerio 0.00000000000001 88

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