C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000341184 MGAT3-001 ENSG00000128268 9606 + 22:39457344-39492194 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000341184
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000341184 3.765±0.00 3.328±0.00 11.062±9.05 5.431±0.00 1.781±0.00 2.171±0.00 2.284±0.00 0.142±0.09 2.909±0.00 0.160±0.00 3.274±1.27 8.519±6.46 2.262±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007AY CIL_0007AY_0002 CGP 22:39399741-39492194
CIL_0002SK CIL_0002SK_0001 CGP 22:39457344-39518132

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 TAS Golgi membrane
GO:0003830 IEA beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity
GO:0006487 IEA protein N-linked glycosylation
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0018279 TAS protein N-linked glycosylation via asparagine
GO:0043687 TAS post-translational protein modification
GO:0044267 TAS cellular protein metabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000044970 Mgat3-201 protein_coding Mus_musculus 0 1908
ENSMUST00000138888 Nr2e3-006 retained_intron Mus_musculus 0.00009 55
ENSMUST00000128108 Nr2e3-003 retained_intron Mus_musculus 0.00009 55
ENSMUST00000156845 Nr2e3-002 retained_intron Mus_musculus 0.00009 55
ENSMUST00000034831 Nr2e3-001 protein_coding Mus_musculus 0.00009 55
ENSMUST00000130831 Nr2e3-004 retained_intron Mus_musculus 0.00009 55

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