C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin-conjugating enzyme E2L 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000342192 UBE2L3-001 ENSG00000185651 9606 + 22:21567547-21624034 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000342192
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000342192 23.084±0.00 25.724±0.00 4.920±0.00 20.066±6.33 16.087±11.65 15.252±8.23 11.876±8.50 15.054±9.75 11.016±2.91 12.653±6.90 13.570±7.78 13.196±7.22 18.210±10.34 17.881±12.55

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PT CIL_0008PT_0001 VISTA 22:21299079-21900013

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000151 TAS ubiquitin ligase complex
GO:0000209 IDA protein polyubiquitination
GO:0003713 IDA transcription coactivator activity
GO:0004842 IMP ubiquitin-protein transferase activity
GO:0005515 IPI:IEA protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IMP regulation of transcription, DNA-templated
GO:0006464 TAS:IEA cellular protein modification process
GO:0006511 TAS ubiquitin-dependent protein catabolic process
GO:0008283 IMP cell proliferation
GO:0015031 IEA protein transport
GO:0016567 IDA protein ubiquitination
GO:0016881 IEA acid-amino acid ligase activity
GO:0019899 TAS enzyme binding
GO:0031398 IGI positive regulation of protein ubiquitination
GO:0031625 IPI ubiquitin protein ligase binding
GO:0044822 IDA poly(A) RNA binding
GO:0051443 IGI positive regulation of ubiquitin-protein transferase activity
GO:0070062 IDA extracellular vesicular exosome
GO:0070979 IDA protein K11-linked ubiquitination
GO:0071383 IMP cellular response to steroid hormone stimulus
GO:0071385 IDA cellular response to glucocorticoid stimulus
GO:0097027 IGI ubiquitin-protein transferase activator activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000115699 Ube2l3-001 protein_coding Mus_musculus 0 1295
ENSMUST00000090192 Ube2l3-201 protein_coding Mus_musculus 0 1223
ENSMUST00000077776 Gm10145-201 processed_pseudogene Mus_musculus 0 760
ENSMUST00000098980 Gm10705-201 processed_pseudogene Mus_musculus 0 743
ENSMUST00000072570 Gm10015-201 processed_pseudogene Mus_musculus 0 699
ENSMUST00000161613 Gm3076-001 processed_pseudogene Mus_musculus 0 671
ENSMUST00000120888 Gm15267-001 processed_pseudogene Mus_musculus 0 647
ENSMUST00000115700 Ube2l3-003 protein_coding Mus_musculus 0 577
ENSMUST00000122873 Ube2l3-002 retained_intron Mus_musculus 0 512
ENSMUST00000121403 Gm11954-001 processed_pseudogene Mus_musculus 0 503
ENSMUST00000180234 Gm6098-201 processed_pseudogene Mus_musculus 0 433
ENSMUST00000157013 Ube2l3-004 processed_transcript Mus_musculus 0 289
ENSMUST00000115706 Ydjc-006 protein_coding Mus_musculus 0 279

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