C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: podocalyxin-like 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000342480 PODXL2-001 ENSG00000114631 9606 + 3:127629181-127672809 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000342480
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000342480 1.559±0.00 2.605±0.00 0.715±0.00 22.623±14.70 5.208±1.87 1.761±0.62 0.321±0.16 2.544±2.07 0.334±0.06 0.974±0.73 0.642±0.39 6.890±3.75 2.357±0.06 21.352±5.83

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008EC CIL_0008EC_0001 VISTA 3:127070872-127672749

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005539 TAS glycosaminoglycan binding
GO:0005887 TAS integral component of plasma membrane
GO:0050901 IDA leukocyte tethering or rolling

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000061262 Podxl2-001 protein_coding Mus_musculus 0 1404
ENSMUST00000038409 Podxl2-003 protein_coding Mus_musculus 0 1400
ENSMUST00000141401 Podxl2-010 processed_transcript Mus_musculus 0 529
ENSMUST00000141348 Podxl2-009 protein_coding Mus_musculus 0 394

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