C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: karyopherin alpha 1 (importin alpha 5)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000344337 KPNA1-001 ENSG00000114030 9606 - 3:122421949-122514928 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000344337
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000344337 7.256±0.00 5.142±0.00 4.495±2.23 3.953±2.48 3.642±0.60 6.168±0.00 4.558±0.00 2.877±0.00 3.562±0.33 11.384±10.41 4.699±1.30 3.561±0.49 5.892±0.11

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000018 TAS regulation of DNA recombination
GO:0005488 IEA binding
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA:ISS:IEA nucleus
GO:0005643 TAS nuclear pore
GO:0005654 TAS nucleoplasm
GO:0005737 IDA:IEA cytoplasm
GO:0005829 TAS cytosol
GO:0006309 TAS apoptotic DNA fragmentation
GO:0006606 IEA protein import into nucleus
GO:0006607 TAS NLS-bearing protein import into nucleus
GO:0006915 TAS apoptotic process
GO:0006921 TAS cellular component disassembly involved in execution phase of apoptosis
GO:0008139 TAS nuclear localization sequence binding
GO:0008565 IEA protein transporter activity
GO:0016032 TAS viral process
GO:0019058 TAS viral life cycle
GO:0019221 TAS cytokine-mediated signaling pathway
GO:0030425 ISS dendrite
GO:0042307 ISS positive regulation of protein import into nucleus
GO:0075733 TAS intracellular transport of virus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000004054 Kpna1-001 protein_coding Mus_musculus 0 4547
ENSMUST00000172534 Kpna1-004 nonsense_mediated_decay Mus_musculus 0 2820
ENSMUST00000173696 Kpna1-003 nonsense_mediated_decay Mus_musculus 0 1722
ENSMUST00000174500 Kpna1-006 nonsense_mediated_decay Mus_musculus 0 741
ENSMUST00000173641 Kpna1-009 protein_coding Mus_musculus 0 529
ENSMUST00000173555 Kpna1-005 protein_coding Mus_musculus 0 523
ENSMUST00000173715 Kpna1-002 retained_intron Mus_musculus 0 514
ENSMUST00000173469 Kpna1-008 retained_intron Mus_musculus 0 492
ENSMUST00000174737 Kpna1-007 nonsense_mediated_decay Mus_musculus 0 379
ENSMUST00000172991 Kpna1-010 retained_intron Mus_musculus 2e-37 163

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