C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: casein kinase 2, alpha 1 polypeptide
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000349736 CSNK2A1-001 ENSG00000101266 9606 - 20:481097-543821 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENST00000349736
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENST00000349736 2.871±0.00 9.599±0.00 1.800±0.00 8.639±3.97 3.586±0.05 3.497±0.36 6.822±3.51 5.419±4.83 4.069±0.00 3.611±1.56 12.299±9.71 8.648±4.07 8.897±0.77

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00096R CIL_00096R_0001 VISTA 20:23407-624368

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000278 TAS mitotic cell cycle
GO:0004672 IEA protein kinase activity
GO:0004674 IDA protein serine/threonine kinase activity
GO:0004713 IEA protein tyrosine kinase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005829 TAS cytosol
GO:0005886 TAS plasma membrane
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006468 IDA:IEA protein phosphorylation
GO:0007165 TAS signal transduction
GO:0007411 TAS axon guidance
GO:0008284 IDA positive regulation of cell proliferation
GO:0016055 IEA Wnt signaling pathway
GO:0016580 IDA Sin3 complex
GO:0016581 IDA NuRD complex
GO:0016772 IEA transferase activity, transferring phosphorus-containing groups
GO:0030177 IMP positive regulation of Wnt signaling pathway
GO:0030307 IDA positive regulation of cell growth
GO:0031519 IDA PcG protein complex
GO:0043154 IMP negative regulation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0045732 IDA positive regulation of protein catabolic process
GO:0047485 IPI protein N-terminus binding
GO:0048511 IEA rhythmic process
GO:0051879 TAS Hsp90 protein binding
GO:0061077 TAS chaperone-mediated protein folding
GO:0071174 IMP mitotic spindle checkpoint

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000099224 Csnk2a1-001 protein_coding Mus_musculus 0 4340
ENSMUST00000190422 CSNK2A1-001 protein_coding Mus_musculus 0 2929
ENSMUST00000178028 Gm10031-201 processed_pseudogene Mus_musculus 0 2813
ENSMUST00000118846 Csnk2a1-ps-001 processed_pseudogene Mus_musculus 0 1581
ENSMUST00000136063 Csnk2a1-002 retained_intron Mus_musculus 0 1399
ENSMUST00000120448 Gm11255-001 processed_pseudogene Mus_musculus 0 1362
ENSMUST00000124791 Csnk2a1-004 protein_coding Mus_musculus 0 551
ENSMUST00000133119 Csnk2a1-005 protein_coding Mus_musculus 0 472
ENSMUST00000141597 Csnk2a1-003 retained_intron Mus_musculus 0 357
ENSDART00000029549 mapk6-001 protein_coding Danio_rerio 0.00002 57

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