C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Rho GTPase activating protein 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000350060 ARHGAP4-003 ENSG00000089820 9606 - X:153907377-153926244 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalHeartLungOvaryPlacentaENST00000350060
Transcript ID Adipose Adrenal Heart Lung Ovary Placenta
ENST00000350060 5.812±0.00 31.902±0.00 3.050±0.00 10.787±0.00 9.847±0.10 10.143±3.93

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001US CIL_0001US_0001 CGP X:153802166-153909223

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005070 TAS SH3/SH2 adaptor activity
GO:0005515 IPI:IEA protein binding
GO:0005622 IEA intracellular
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0007010 TAS cytoskeleton organization
GO:0007165 IEA signal transduction
GO:0007264 TAS small GTPase mediated signal transduction
GO:0007266 TAS Rho protein signal transduction
GO:0009967 TAS positive regulation of signal transduction
GO:0043065 TAS positive regulation of apoptotic process
GO:0048011 TAS neurotrophin TRK receptor signaling pathway
GO:0051056 TAS regulation of small GTPase mediated signal transduction
GO:0097190 TAS apoptotic signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000114407 Arhgap4-009 protein_coding Mus_musculus 0 1663
ENSMUST00000064376 Arhgap4-001 protein_coding Mus_musculus 0 1663
ENSMUST00000114405 Arhgap4-018 protein_coding Mus_musculus 0 1663
ENSMUST00000130976 Arhgap4-003 nonsense_mediated_decay Mus_musculus 0 1637
ENSMUST00000114406 Arhgap4-002 protein_coding Mus_musculus 0 1262
ENSMUST00000145159 Arhgap4-010 retained_intron Mus_musculus 0 1026
ENSMUST00000151600 Arhgap4-008 retained_intron Mus_musculus 0 1026
ENSMUST00000127163 Arhgap4-007 retained_intron Mus_musculus 0 1026
ENSMUST00000148319 Arhgap4-005 retained_intron Mus_musculus 0 1026
ENSMUST00000147510 Arhgap4-006 retained_intron Mus_musculus 0 948
ENSMUST00000114404 Arhgap4-013 protein_coding Mus_musculus 0 904
ENSMUST00000140393 Arhgap4-019 nonsense_mediated_decay Mus_musculus 0 904
ENSMUST00000149774 Arhgap4-016 protein_coding Mus_musculus 0 453
ENSMUST00000142925 Arhgap4-015 processed_transcript Mus_musculus 0 252
ENSMUST00000101470 Avpr2-002 protein_coding Mus_musculus 2e-34 152
ENSMUST00000143696 Arhgap4-020 protein_coding Mus_musculus 6e-30 137
ENSDART00000050420 arhgap4a-201 protein_coding Danio_rerio 0.00000000001 77
ENSDART00000145307 arhgap4a-001 protein_coding Danio_rerio 0.00000000001 77

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