C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Rho GTPase activating protein 4a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000050420 arhgap4a-201 ENSDARG00000039265 7955 + 23:25276726-25302730 protein_coding

Danio rerio EnsemblZv9

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartMuscleENSDART00000050420
Transcript ID Brain Heart Muscle
ENSDART00000050420 0.123±0.00 1.054±0.51 0.744±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00068C CIL_00068C_0001 CGP 23:25276726-25337860

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005622 IEA intracellular
GO:0007165 IEA signal transduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000020322 Srgap1-001 protein_coding Mus_musculus 0.00000002 68
ENSMUST00000081688 Srgap1-201 protein_coding Mus_musculus 0.00000002 68
ENSMUST00000161996 Srgap1-003 processed_transcript Mus_musculus 0.0000007 60
ENST00000350060 ARHGAP4-003 protein_coding Homo_sapiens 0.00000000001 77
ENST00000370016 ARHGAP4-011 protein_coding Homo_sapiens 0.00000000001 77
ENST00000370028 ARHGAP4-001 protein_coding Homo_sapiens 0.00000000001 77
ENST00000393721 ARHGAP4-024 protein_coding Homo_sapiens 0.00000000001 77
ENST00000404127 ARHGAP4-014 nonsense_mediated_decay Homo_sapiens 0.00000000001 77
ENST00000420383 ARHGAP4-002 nonsense_mediated_decay Homo_sapiens 0.0000000005 71
ENST00000442172 ARHGAP4-010 protein_coding Homo_sapiens 0.0000000002 71
ENST00000470209 ARHGAP4-012 retained_intron Homo_sapiens 0.00000000001 77
ENST00000494302 ARHGAP4-013 retained_intron Homo_sapiens 0.00000000001 77
ENST00000494397 ARHGAP4-016 retained_intron Homo_sapiens 0.000000000007 77

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