C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SYF2 pre-mRNA-splicing factor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000354361 SYF2-004 ENSG00000117614 9606 - 1:25222965-25232486 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000354361
Transcript ID Adipose Adrenal Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000354361 6.351±0.00 7.750±0.00 7.766±0.00 8.605±0.00 24.489±0.00 5.245±0.00 2.934±0.00 6.073±0.00 7.313±0.00 10.208±0.74 4.233±0.00 10.396±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000398 IC mRNA splicing, via spliceosome
GO:0005634 IDA nucleus
GO:0044822 IDA poly(A) RNA binding
GO:0071013 IDA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000030622 Syf2-001 protein_coding Mus_musculus 0 494
ENSMUST00000144037 Syf2-003 retained_intron Mus_musculus 0 239

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