C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: v-ets avian erythroblastosis virus E26 oncogene homolog 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000360938 ETS2-002 ENSG00000157557 9606 + 21:38805831-38824955 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000360938
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000360938 49.083±0.00 66.388±0.00 1.352±0.00 19.632±8.62 14.541±2.91 27.458±15.70 7.455±4.67 22.744±12.84 17.190±9.81 51.457±41.34 42.475±35.85 31.634±21.28 26.415±5.92 10.620±9.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003GI CIL_0003GI_0001 CGP 21:38380027-38824955
CIL_0007UB CIL_0007UB_0001 VISTA 21:38689433-39291200
CIL_0000XL CIL_0000XL_0001 CGP 21:38805307-39183851

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000978 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000981 IBA sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0001078 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0001501 TAS skeletal system development
GO:0003677 TAS DNA binding
GO:0003700 IDA:IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IEA:IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006357 IBA regulation of transcription from RNA polymerase II promoter
GO:0006366 IBA transcription from RNA polymerase II promoter
GO:0030154 IBA cell differentiation
GO:0043565 IEA sequence-specific DNA binding
GO:0045893 IDA positive regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000023612 Ets2-001 protein_coding Mus_musculus 0 1587
ENSMUST00000155226 Ets2-002 protein_coding Mus_musculus 0 826
ENSMUST00000140544 Ets2-005 retained_intron Mus_musculus 0 702
ENSMUST00000143554 Ets2-004 retained_intron Mus_musculus 0 568
ENSDART00000025581 ets2-201 protein_coding Danio_rerio 0 374
ENSDART00000148833 ets2-001 protein_coding Danio_rerio 0 374
ENSMUST00000145509 Ets2-003 retained_intron Mus_musculus 0 198
ENSDART00000100700 gabpa-002 protein_coding Danio_rerio 0.000001 60
ENSDART00000100701 gabpa-001 protein_coding Danio_rerio 0.000001 60

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