C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DEAH (Asp-Glu-Ala-His) box helicase 9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000367549 DHX9-001 ENSG00000135829 9606 + 1:182839369-182887751 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000367549
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000367549 13.194±0.00 16.545±0.00 2.507±0.00 12.140±4.32 10.543±1.87 8.317±5.49 7.078±3.95 14.687±12.24 6.424±1.20 8.782±4.17 6.986±3.29 20.518±6.66 15.391±1.44 20.214±8.54

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000398 TAS mRNA splicing, via spliceosome
GO:0001085 IPI RNA polymerase II transcription factor binding
GO:0001649 IDA osteoblast differentiation
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0003724 TAS RNA helicase activity
GO:0004003 TAS ATP-dependent DNA helicase activity
GO:0004004 TAS ATP-dependent RNA helicase activity
GO:0004386 IEA helicase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005730 IDA nucleolus
GO:0005737 TAS cytoplasm
GO:0005813 IDA centrosome
GO:0005829 TAS cytosol
GO:0006200 IEA ATP catabolic process
GO:0007623 IEA circadian rhythm
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0030529 IDA ribonucleoprotein complex
GO:0032481 TAS positive regulation of type I interferon production
GO:0032508 TAS DNA duplex unwinding
GO:0034605 IEA cellular response to heat
GO:0036464 IDA cytoplasmic ribonucleoprotein granule
GO:0044822 IDA poly(A) RNA binding
GO:0045087 TAS innate immune response
GO:0070934 IMP CRD-mediated mRNA stabilization
GO:0070937 IDA CRD-mediated mRNA stability complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000186380 Dhx9-001 protein_coding Mus_musculus 0 4457
ENSMUST00000042141 Dhx9-201 protein_coding Mus_musculus 0 4442
ENSMUST00000186966 Dhx9-002 nonsense_mediated_decay Mus_musculus 0 2809
ENSMUST00000188345 Dhx9-003 protein_coding Mus_musculus 0 2713
ENSMUST00000190544 Dhx9-007 nonsense_mediated_decay Mus_musculus 0 1705
ENSMUST00000189516 Dhx9-008 retained_intron Mus_musculus 0 754
ENSMUST00000189509 Dhx9-005 retained_intron Mus_musculus 0 556
ENSMUST00000189425 Dhx9-004 retained_intron Mus_musculus 0 206
ENSMUST00000190383 Dhx9-006 retained_intron Mus_musculus 1e-27 130

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