C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ADAM metallopeptidase with thrombospondin type 1 motif, 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000367996 ADAMTS4-001 ENSG00000158859 9606 - 1:161184308-161199056 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000367996
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000367996 28.086±0.00 2.484±0.00 0.139±0.00 4.433±3.85 0.946±0.66 3.933±3.76 2.374±0.00 0.573±0.39 1.350±0.01 21.425±21.30 1.124±0.84 6.956±5.16 0.589±0.18 0.401±0.13

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001501 TAS skeletal system development
GO:0002020 IPI protease binding
GO:0004222 IEA metalloendopeptidase activity
GO:0005515 IPI protein binding
GO:0005576 TAS extracellular region
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005615 IDA extracellular space
GO:0006508 IEA proteolysis
GO:0008233 TAS peptidase activity
GO:0008237 TAS metallopeptidase activity
GO:0008270 IEA zinc ion binding
GO:0022617 TAS extracellular matrix disassembly
GO:0030198 TAS extracellular matrix organization
GO:0031012 IDA:IEA extracellular matrix
GO:0042742 IEA defense response to bacterium

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000111315 Adamts4-001 protein_coding Mus_musculus 0 3415
ENSMUST00000111314 Adamts4-002 protein_coding Mus_musculus 0 2713
ENSMUST00000116286 Stk40-201 protein_coding Mus_musculus 0.0000003 64
ENSMUST00000127092 Stk40-002 processed_transcript Mus_musculus 0.0000003 64
ENSMUST00000173269 Neu1-002 retained_intron Mus_musculus 0.000004 60

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