C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: death effector domain containing
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000368006 DEDD-001 ENSG00000158796 9606 - 1:161120974-161132668 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000368006
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000368006 16.580±0.00 14.210±0.00 0.716±0.00 1.719±0.00 7.990±0.00 13.458±0.00 3.948±3.01 10.624±0.00 7.020±0.00 7.995±6.62 16.281±0.00 14.822±0.50 15.420±0.22 22.916±3.36

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000CT CIL_0000CT_0002 CGP 1:161100556-161125445

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 ISS DNA binding
GO:0005515 IPI:IEA protein binding
GO:0005730 ISS nucleolus
GO:0005737 ISS cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0007283 IEA spermatogenesis
GO:0008625 IEA extrinsic apoptotic signaling pathway via death domain receptors
GO:0042177 IEA negative regulation of protein catabolic process
GO:0042981 IEA regulation of apoptotic process
GO:0046697 IEA decidualization
GO:1901837 IEA negative regulation of transcription of nuclear large rRNA transcript from RNA polymerase I promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000111300 Dedd-001 protein_coding Mus_musculus 0 2350
ENSMUST00000111299 Dedd-003 protein_coding Mus_musculus 0 2257
ENSMUST00000064950 Dedd-002 protein_coding Mus_musculus 0 1964
ENSMUST00000097467 Dedd-004 protein_coding Mus_musculus 0 1869
ENSMUST00000111289 Nit1-001 protein_coding Mus_musculus 0 1247
ENSMUST00000129116 Dedd-007 protein_coding Mus_musculus 0 1088
ENSMUST00000142063 Dedd-006 protein_coding Mus_musculus 0 878
ENSMUST00000127830 Dedd-010 protein_coding Mus_musculus 0 749
ENSMUST00000131653 Dedd-005 retained_intron Mus_musculus 0 693
ENSMUST00000141357 Nit1-005 retained_intron Mus_musculus 0 549
ENSMUST00000146428 Nit1-004 retained_intron Mus_musculus 0 508
ENSMUST00000111296 Nit1-003 protein_coding Mus_musculus 0 508
ENSDART00000128377 dedd-201 protein_coding Danio_rerio 5.04467e-44 183
ENSDART00000042867 dedd-001 protein_coding Danio_rerio 5.04467e-44 183
ENSMUST00000111295 Nit1-002 protein_coding Mus_musculus 1e-25 122

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