C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: hippocampus abundant transcript 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000370152 HIAT1-001 ENSG00000156875 9606 + 1:100038097-100083377 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000370152
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000370152 11.287±0.00 14.443±0.00 3.247±0.00 11.712±0.19 5.611±3.66 8.171±2.51 4.097±2.20 8.859±5.61 7.261±0.50 17.098±5.85 3.293±1.20 10.107±3.97 12.086±0.96 19.586±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007CE CIL_0007CE_0002 CGP 1:100038097-100132955

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005215 IEA transporter activity
GO:0005886 IEA plasma membrane
GO:0016021 IEA integral component of membrane
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000029570 Hiat1-001 protein_coding Mus_musculus 0 3325
ENSDART00000122349 hiat1b-001 protein_coding Danio_rerio 0 662
ENSDART00000063207 hiat1b-201 protein_coding Danio_rerio 0 652
ENSMUST00000140672 Hiat1-005 protein_coding Mus_musculus 0 606
ENSMUST00000130631 Hiat1-004 retained_intron Mus_musculus 0 527
ENSMUST00000150402 Hiat1-002 retained_intron Mus_musculus 0 460
ENSMUST00000138418 Hiat1-003 retained_intron Mus_musculus 0 403

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