C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: zinc finger and SCAN domain containing 20
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000373413 ZSCAN20-002 ENSG00000121903 9606 + 1:33472651-33492636 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalHeartKidneyLungOvaryENST00000373413
Transcript ID Adrenal Heart Kidney Lung Ovary
ENST00000373413 0.272±0.00 0.131±0.00 0.198±0.00 0.077±0.00 0.163±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00097K CIL_00097K_0001 VISTA 1:32956893-33558359
CIL_0008F1 CIL_0008F1_0001 VISTA 1:33063188-33665346

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000097877 Zscan20-001 protein_coding Mus_musculus 0 617
ENSMUST00000135309 Zscan20-002 nonsense_mediated_decay Mus_musculus 0 399
ENSMUST00000084276 Zscan20-006 processed_transcript Mus_musculus 9e-22 110
ENSMUST00000116671 Gm14644-001 processed_pseudogene Mus_musculus 3e-17 95

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