C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tyrosyl-tRNA synthetase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000373477 YARS-001 ENSG00000134684 9606 - 1:32775239-32818153 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000373477
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000373477 24.149±0.00 21.361±0.00 0.967±0.00 23.940±17.49 9.699±7.28 11.872±9.49 5.672±4.42 11.745±6.54 16.886±14.28 23.535±21.82 60.138±0.00 26.288±16.55 13.970±6.88 25.372±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000049 IEA tRNA binding
GO:0000166 IEA nucleotide binding
GO:0004812 IEA aminoacyl-tRNA ligase activity
GO:0004831 TAS:IEA tyrosine-tRNA ligase activity
GO:0004871 NAS signal transducer activity
GO:0005153 TAS interleukin-8 receptor binding
GO:0005524 IEA ATP binding
GO:0005615 TAS extracellular space
GO:0005634 IDA nucleus
GO:0005737 IDA:IEA cytoplasm
GO:0005829 TAS cytosol
GO:0006418 TAS:IEA tRNA aminoacylation for protein translation
GO:0006437 IEA tyrosyl-tRNA aminoacylation
GO:0006915 TAS apoptotic process
GO:0007165 NAS signal transduction
GO:0010467 TAS gene expression
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000106054 Yars-001 protein_coding Mus_musculus 0 2158
ENSMUST00000137591 Yars-007 processed_transcript Mus_musculus 0 885
ENSMUST00000133992 Yars-003 nonsense_mediated_decay Mus_musculus 0 640
ENSMUST00000128287 Yars-008 retained_intron Mus_musculus 0 614
ENSMUST00000148619 Yars-002 retained_intron Mus_musculus 0 549
ENSMUST00000146106 Yars-005 retained_intron Mus_musculus 0 296
ENSMUST00000147248 Yars-006 retained_intron Mus_musculus 0 294
ENSMUST00000106059 S100pbp-001 protein_coding Mus_musculus 0 226
ENSMUST00000126748 S100pbp-005 processed_transcript Mus_musculus 3.00018e-42 178
ENSMUST00000117350 S100pbp-004 protein_coding Mus_musculus 2e-24 119
ENSMUST00000137992 S100pbp-011 processed_transcript Mus_musculus 3e-22 111
ENSMUST00000117497 S100pbp-008 protein_coding Mus_musculus 1e-17 97

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