C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tyrosyl-tRNA synthetase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000106054 Yars-001 ENSMUSG00000028811 10090 + 4:129189760-129219607 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000106054
Transcript ID Adipose Adrenal Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000106054 10.306±1.43 8.632±1.78 12.366±0.78 25.660±10.18 8.064±2.31 5.150±0.36 8.877±0.48 21.589±4.97 8.284±0.05 13.434±2.31 12.465±2.54 28.016±8.19 5.610±0.52

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006DR CIL_0006DR_0002 CGP 4:129189760-129261404

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000049 IEA tRNA binding
GO:0004831 IEA tyrosine-tRNA ligase activity
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0006437 IEA tyrosyl-tRNA aminoacylation
GO:0008150 ND biological_process
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000124491 yars-201 protein_coding Danio_rerio 0 651
ENSDART00000052126 yars-001 protein_coding Danio_rerio 0 651
ENSDART00000135484 yars-006 protein_coding Danio_rerio 0 603
ENSDART00000140603 yars-004 protein_coding Danio_rerio 0 556
ENSDART00000143394 yars-007 protein_coding Danio_rerio 0 507
ENSDART00000145423 yars-003 processed_transcript Danio_rerio 0 326
ENSDART00000137884 yars-002 processed_transcript Danio_rerio 0 291
ENSDART00000139599 yars-005 protein_coding Danio_rerio 0 222
ENST00000373477 YARS-001 protein_coding Homo_sapiens 0 2158
ENST00000466052 YARS-008 processed_transcript Homo_sapiens 0 303
ENST00000469100 YARS-003 processed_transcript Homo_sapiens 0 725
ENST00000478828 YARS-005 processed_transcript Homo_sapiens 0 957
ENST00000481895 YARS-007 processed_transcript Homo_sapiens 0 798
ENST00000487404 YARS-002 processed_transcript Homo_sapiens 0 885
ENST00000490826 YARS-004 processed_transcript Homo_sapiens 0 339
ENST00000616261 YARS-201 protein_coding Homo_sapiens 0 1459

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