C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tet methylcytosine dioxygenase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000373644 TET1-001 ENSG00000138336 9606 + 10:68560656-68694482 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000373644
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000373644 0.181±0.00 0.190±0.00 0.236±0.00 0.344±0.15 0.229±0.05 0.247±0.07 0.053±0.00 0.338±0.20 0.388±0.31 0.097±0.06 0.006±0.00 0.124±0.05 0.139±0.06 0.176±0.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000PW CIL_0000PW_0002 CGP 10:68477999-68694482

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001826 ISS inner cell mass cell differentiation
GO:0003677 IEA DNA binding
GO:0005506 IDA iron ion binding
GO:0005634 IC nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006493 ISS protein O-linked glycosylation
GO:0008270 IEA zinc ion binding
GO:0016568 IEA chromatin modification
GO:0019827 ISS stem cell maintenance
GO:0043566 IDA structure-specific DNA binding
GO:0044030 IEA regulation of DNA methylation
GO:0045944 ISS positive regulation of transcription from RNA polymerase II promoter
GO:0055114 IEA oxidation-reduction process
GO:0070579 IDA methylcytosine dioxygenase activity
GO:0080111 IMP DNA demethylation
GO:0090310 IMP negative regulation of methylation-dependent chromatin silencing

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000050826 Tet1-201 protein_coding Mus_musculus 0 680
ENSMUST00000174189 Tet1-001 protein_coding Mus_musculus 0 592
ENSMUST00000173081 Tet1-002 processed_transcript Mus_musculus 0 481
ENSDART00000090796 tet3-201 protein_coding Danio_rerio 5e-25 122
ENSDART00000137355 tet3-001 protein_coding Danio_rerio 5e-25 122

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