C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: growth differentiation factor 5 opposite strand
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000374375 GDF5OS-001 ENSG00000204183 9606 + 20:35433029-35435450 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainColonHeartKidneyLiverMuscleTestisENST00000374375
Transcript ID Adipose Adrenal Brain Colon Heart Kidney Liver Muscle Testis
ENST00000374375 0.163±0.00 0.396±0.00 0.185±0.00 0.084±0.00 0.058±0.00 0.117±0.00 0.090±0.00 0.011±0.00 0.196±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008EI CIL_0008EI_0001 VISTA 20:35018152-35620688
CIL_0005FR CIL_0005FR_0001 CGP 20:35302566-35435450
CIL_0005FQ CIL_0005FQ_0001 CGP 20:35433029-35454746

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005739 IEA mitochondrion

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000109629 Gm15557-001 protein_coding Mus_musculus 0 1380
ENSMUST00000040162 Gdf5-001 protein_coding Mus_musculus 0 1260
ENSMUST00000030474 Nsun4-002 nonsense_mediated_decay Mus_musculus 0.000002 58

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