C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chondroitin sulfate N-acetylgalactosaminyltransferase 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000374466 CSGALNACT2-001 ENSG00000169826 9606 + 10:43138486-43185308 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000374466
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000374466 7.902±0.00 5.487±0.00 1.117±0.00 3.091±1.39 3.538±1.12 2.776±1.88 1.943±0.73 2.983±1.69 2.532±0.16 8.624±4.59 1.555±1.49 5.033±1.25 4.565±2.21 5.096±1.42

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 TAS Golgi membrane
GO:0005975 TAS carbohydrate metabolic process
GO:0008376 IDA:IEA acetylgalactosaminyltransferase activity
GO:0016020 IDA membrane
GO:0030166 IDA proteoglycan biosynthetic process
GO:0030173 NAS integral component of Golgi membrane
GO:0030203 TAS glycosaminoglycan metabolic process
GO:0030204 TAS chondroitin sulfate metabolic process
GO:0030206 TAS chondroitin sulfate biosynthetic process
GO:0032580 IEA Golgi cisterna membrane
GO:0044281 TAS small molecule metabolic process
GO:0046872 IEA metal ion binding
GO:0047237 IEA glucuronylgalactosylproteoglycan 4-beta-N-acetylgalactosaminyltransferase activity
GO:0050650 IDA chondroitin sulfate proteoglycan biosynthetic process
GO:0050651 IDA dermatan sulfate proteoglycan biosynthetic process
GO:0050652 TAS dermatan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process
GO:0050653 TAS chondroitin sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000049344 Csgalnact2-001 protein_coding Mus_musculus 0 2422
ENSMUST00000125531 Csgalnact2-002 retained_intron Mus_musculus 0 1327
ENSMUST00000136265 Csgalnact2-003 protein_coding Mus_musculus 0 1011

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