C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chondroitin sulfate N-acetylgalactosaminyltransferase 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000049344 Csgalnact2-001 ENSMUSG00000042042 10090 - 6:118107452-118139140 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000049344
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000049344 3.736±1.61 2.575±0.20 8.352±1.18 1.464±0.04 3.516±0.44 1.015±0.37 2.494±0.11 3.461±0.56 2.522±1.41 12.651±0.66 7.320±1.52 4.538±2.10 2.720±0.58 0.650±0.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000338 CIL_000338_0002 CGP 6:118107452-118197744

Gene Ontology

GO IDEvidence TypeGO Description
GO:0008376 IDA:ISS acetylgalactosaminyltransferase activity
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0030166 ISS proteoglycan biosynthetic process
GO:0032580 IEA Golgi cisterna membrane
GO:0046872 IEA metal ion binding
GO:0047237 IEA glucuronylgalactosylproteoglycan 4-beta-N-acetylgalactosaminyltransferase activity
GO:0050650 IGI chondroitin sulfate proteoglycan biosynthetic process
GO:0050651 IEA dermatan sulfate proteoglycan biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000332270 RP3-341D10.1-001 processed_pseudogene Homo_sapiens 0 1099
ENST00000374466 CSGALNACT2-001 protein_coding Homo_sapiens 0 2422

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