C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L11
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000374550 RPL11-001 ENSG00000142676 9606 + 1:23691779-23696425 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000374550
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000374550 1509.150±0.00 1906.910±0.00 65.594±0.00 246.777±150.84 628.213±523.45 835.672±697.30 186.252±128.52 434.402±248.60 408.060±146.27 892.403±761.46 366.638±291.46 1505.208±1356.37 522.034±529.85 1081.480±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003723 TAS RNA binding
GO:0003735 IEA:NAS structural constituent of ribosome
GO:0005515 IPI protein binding
GO:0005730 IDA nucleolus
GO:0005829 TAS cytosol
GO:0005840 IEA ribosome
GO:0006364 IMP rRNA processing
GO:0006412 IEA:NAS translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006605 IMP protein targeting
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0019843 IEA rRNA binding
GO:0022625 IDA cytosolic large ribosomal subunit
GO:0034504 ISS protein localization to nucleus
GO:0042273 IMP ribosomal large subunit biogenesis
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000102536 Rpl11-001 protein_coding Mus_musculus 0 784
ENSMUST00000079733 Gm10036-201 protein_coding Mus_musculus 0 743
ENSMUST00000084614 Gm10288-001 processed_pseudogene Mus_musculus 0 737
ENSMUST00000125726 Rpl11-003 processed_transcript Mus_musculus 0 728
ENSMUST00000085631 Gm7589-001 processed_pseudogene Mus_musculus 0 699
ENSMUST00000155873 Rpl11-002 protein_coding Mus_musculus 0 697
ENSMUST00000166852 Gm5093-201 protein_coding Mus_musculus 0 649
ENSMUST00000147059 Rpl11-004 processed_transcript Mus_musculus 0 579
ENSMUST00000118690 Gm12901-001 processed_pseudogene Mus_musculus 0 577
ENSDART00000063870 rpl11-201 protein_coding Danio_rerio 0 507
ENSMUST00000142440 Rpl11-007 processed_transcript Mus_musculus 0 497
ENSMUST00000128733 Rpl11-005 processed_transcript Mus_musculus 0 438
ENSMUST00000150565 Rpl11-006 processed_transcript Mus_musculus 0 339
ENSMUST00000137580 Rpl11-009 processed_transcript Mus_musculus 0 285
ENSMUST00000133613 Rpl11-008 processed_transcript Mus_musculus 0 231
ENSDART00000075902 CABZ01086825.1-201 protein_coding Danio_rerio 2e-18 97

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