C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: eukaryotic translation initiation factor 2, subunit 2 beta, 38kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000374980 EIF2S2-001 ENSG00000125977 9606 - 20:34088298-34112332 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000374980
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000374980 18.579±0.00 21.055±0.00 2.861±0.00 10.531±3.73 10.808±2.83 13.515±8.30 7.036±4.19 10.662±7.30 8.896±4.43 14.791±10.98 16.602±12.79 30.567±27.00 21.239±16.55 26.860±6.21

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098F CIL_00098F_0001 VISTA 20:33968769-34569610

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001701 IEA in utero embryonic development
GO:0002176 IEA male germ cell proliferation
GO:0003723 TAS RNA binding
GO:0003743 IDA:IEA translation initiation factor activity
GO:0005515 IPI protein binding
GO:0005829 TAS cytosol
GO:0005850 TAS eukaryotic translation initiation factor 2 complex
GO:0006412 TAS translation
GO:0006413 TAS:IEA translational initiation
GO:0008135 TAS translation factor activity, nucleic acid binding
GO:0008584 IEA male gonad development
GO:0010467 TAS gene expression
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000099173 Eif2s2-001 protein_coding Mus_musculus 0 1967
ENSMUST00000166171 Eif2s2-201 protein_coding Mus_musculus 0 1816
ENSMUST00000182415 Gm9892-001 processed_pseudogene Mus_musculus 0 1389
ENSMUST00000147136 Eif2s2-002 retained_intron Mus_musculus 0 484
ENSMUST00000161172 Eif2s2-005 protein_coding Mus_musculus 0 472
ENSMUST00000135524 Eif2s2-003 retained_intron Mus_musculus 0 294

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