C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tumor necrosis factor receptor superfamily, member 1B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000376259 TNFRSF1B-001 ENSG00000028137 9606 + 1:12167003-12209228 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000376259
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000376259 58.406±0.00 12.605±0.00 1.258±0.75 6.340±5.61 8.764±7.50 5.748±0.00 2.648±0.40 3.634±1.78 15.584±13.59 6.367±0.00 9.685±7.18 28.636±6.31 1.897±1.22

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00087H CIL_00087H_0001 VISTA 1:11580820-12184055

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005031 IEA tumor necrosis factor-activated receptor activity
GO:0005515 IPI:IEA protein binding
GO:0005576 IEA extracellular region
GO:0005634 IEA nucleus
GO:0005886 IEA plasma membrane
GO:0006954 IEA inflammatory response
GO:0006955 IEA immune response
GO:0007166 IEA cell surface receptor signaling pathway
GO:0007568 IEA aging
GO:0008630 IEA intrinsic apoptotic signaling pathway in response to DNA damage
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0030424 IEA axon
GO:0031625 IPI ubiquitin protein ligase binding
GO:0032496 IEA response to lipopolysaccharide
GO:0033209 IEA tumor necrosis factor-mediated signaling pathway
GO:0043025 IEA neuronal cell body
GO:0043196 IEA varicosity
GO:0045121 IDA membrane raft
GO:0048471 IEA perinuclear region of cytoplasm
GO:0050728 IEA negative regulation of inflammatory response
GO:0050779 IEA RNA destabilization
GO:0051044 IMP positive regulation of membrane protein ectodomain proteolysis
GO:0071222 IMP cellular response to lipopolysaccharide
GO:0071363 IEA cellular response to growth factor stimulus
GO:0097191 IEA extrinsic apoptotic signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000030336 Tnfrsf1b-001 protein_coding Mus_musculus 0 566

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