C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TBC1 domain family, member 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000377625 TBC1D4-201 ENSG00000136111 9606 - 13:75284665-75482114 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000377625
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000377625 6.619±0.00 0.894±0.00 5.402±0.00 4.249±2.24 1.659±0.21 2.689±1.98 4.935±3.16 1.349±0.62 0.987±0.00 6.132±0.00 4.490±1.95 2.055±0.32 2.375±0.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00004F CIL_00004F_0001 CGP 13:75284665-75549439

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005097 IEA Rab GTPase activator activity
GO:0005515 IEA protein binding
GO:0005737 IDA cytoplasm
GO:0016192 IMP vesicle-mediated transport
GO:0030659 TAS cytoplasmic vesicle membrane
GO:0032313 IEA regulation of Rab GTPase activity
GO:0032851 IEA positive regulation of Rab GTPase activity
GO:0032869 IMP cellular response to insulin stimulus
GO:0061024 TAS membrane organization
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000161991 Tbc1d4-001 protein_coding Mus_musculus 0 3842
ENSMUST00000159951 Tbc1d4-003 protein_coding Mus_musculus 0 3110
ENSMUST00000160297 Tbc1d4-004 retained_intron Mus_musculus 0 2361
ENSMUST00000159668 Tbc1d4-006 retained_intron Mus_musculus 0 2346
ENSMUST00000159484 Tbc1d4-005 retained_intron Mus_musculus 0 2261
ENSMUST00000100340 Tbc1d4-002 protein_coding Mus_musculus 0 2037
ENSMUST00000162617 Tbc1d4-010 protein_coding Mus_musculus 0 2037
ENSMUST00000161304 Tbc1d4-008 retained_intron Mus_musculus 0 1652
ENSMUST00000159664 Tbc1d4-007 nonsense_mediated_decay Mus_musculus 0 821

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