C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000378302 RCBTB1-001 ENSG00000136144 9606 - 13:49531946-49585583 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000378302
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000378302 3.261±0.00 1.749±0.00 4.919±0.99 3.040±0.00 0.847±0.42 3.237±1.42 1.561±0.43 2.215±0.59 3.176±0.78 0.378±0.00 4.509±2.50 2.086±1.66 3.204±0.79

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00020M CIL_00020M_0002 CGP 13:49531946-49633872

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007049 IEA cell cycle
GO:0016568 IEA chromatin modification

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000022551 Rcbtb1-003 protein_coding Mus_musculus 0 2106
ENSMUST00000043227 Rcbtb1-001 protein_coding Mus_musculus 0 2106
ENSMUST00000174009 Rcbtb1-002 nonsense_mediated_decay Mus_musculus 0 2013
ENSMUST00000173547 Rcbtb1-009 protein_coding Mus_musculus 0 726
ENSMUST00000153225 Rcbtb1-007 processed_transcript Mus_musculus 0 680
ENSMUST00000172810 Rcbtb1-011 nonsense_mediated_decay Mus_musculus 0 547
ENSMUST00000110952 Rcbtb2-201 protein_coding Mus_musculus 0 532
ENSMUST00000169479 Rcbtb2-202 protein_coding Mus_musculus 0 532
ENSMUST00000022702 Rcbtb2-008 protein_coding Mus_musculus 0 532
ENSMUST00000169513 Rcbtb2-002 protein_coding Mus_musculus 0 532
ENSMUST00000170677 Rcbtb2-009 protein_coding Mus_musculus 0 532
ENSMUST00000164822 Rcbtb2-001 protein_coding Mus_musculus 0 532
ENSMUST00000095778 Rcbtb1-004 processed_transcript Mus_musculus 0 508
ENSMUST00000171767 Rcbtb2-006 protein_coding Mus_musculus 0 470
ENSMUST00000163797 Rcbtb2-010 nonsense_mediated_decay Mus_musculus 0 353
ENSMUST00000164298 Rcbtb2-011 nonsense_mediated_decay Mus_musculus 0 353

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