C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Nance-Horan syndrome (congenital cataracts and dental anomalies)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000380060 NHS-001 ENSG00000188158 9606 + X:17375420-17735994 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000380060
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000380060 0.264±0.00 0.356±0.00 0.851±0.00 0.142±0.04 0.122±0.00 0.215±0.00 0.126±0.00 1.367±0.00 1.445±0.00 0.360±0.04 0.174±0.08 0.116±0.01 0.472±0.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002L3 CIL_0002L3_0002 CGP X:16946691-17735994

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002088 IEA lens development in camera-type eye
GO:0005737 IEA cytoplasm
GO:0005886 IEA plasma membrane
GO:0005923 IEA tight junction
GO:0030154 IEA cell differentiation
GO:0042995 IEA cell projection

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000087085 Nhs-001 protein_coding Mus_musculus 0 6390
ENSMUST00000081569 Nhs-201 protein_coding Mus_musculus 0 5446
ENSDART00000109567 nhsa-201 protein_coding Danio_rerio 0.000000000003 81

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