C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002L3_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000076768-ENSDARG00000070227 CGP 7955 23:41182967-41506870
GeneTranscriptPositionBiotype
ENSDARG00000070227 (nhsa)
Nance-Horan syndrome a (human) 		ENSDART00000109567 (nhsa-201) 41297168-41506870 protein_coding
ENSDARG00000076768 (REPS2)
RALBP1 associated Eps domain containing 2 		ENSDART00000115161 (REPS2-201) 41182967-41279331 protein_coding
CIL_0002L3_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000169891-ENSG00000188158 CGP 9606 X:16946691-17735994
GeneTranscriptPositionBiotype
ENSG00000169891 (REPS2)
RALBP1 associated Eps domain containing 2 		ENST00000303843 (REPS2-001) 16946862-17153272 protein_coding
ENST00000357277 (REPS2-005) 16946691-17153280 protein_coding
ENST00000469714 (REPS2-004) 17074513-17147629 processed_transcript
ENST00000470686 (REPS2-003) 17135694-17147628 retained_intron
ENST00000481792 (REPS2-002) 16947070-17022371 processed_transcript
ENSG00000188158 (NHS)
Nance-Horan syndrome (congenital cataracts and dental anomalies) 		ENST00000380060 (NHS-001) 17375420-17735994 protein_coding
ENST00000398097 (NHS-003) 17635293-17735978 protein_coding
ENST00000485305 (NHS-002) 17719263-17724370 processed_transcript
ENST00000615422 (NHS-201) 17686782-17735978 protein_coding
ENST00000617601 (NHS-202) 17635293-17735991 protein_coding
ENSG00000214321 (CBX1P4)
chromobox homolog 1 pseudogene 4 		ENST00000439415 (CBX1P4-001) 17282637-17283093 processed_pseudogene
ENSG00000214322 (CBX1P2)
chromobox homolog 1 pseudogene 2 		ENST00000453841 (CBX1P2-001) 17099782-17100239 processed_pseudogene
ENSG00000226153 (RP3-389A20.5)
 ENST00000427102 (RP3-389A20.5-001) 17705339-17705691 processed_pseudogene
ENSG00000230020 (NHS-AS1)
NHS antisense RNA 1 		ENST00000452788 (NHS-AS1-001) 17552349-17557387 antisense
ENSG00000235834 (RP1-60N8.1)
 ENST00000433228 (RP1-60N8.1-001) 17528435-17587160 sense_intronic
ENSG00000238764 (snoU13)
Small nucleolar RNA U13 		ENST00000458802 (snoU13.1-219) 17357930-17358033 snoRNA
ENSG00000265465 (MIR4768)
microRNA 4768 		ENST00000585270 (MIR4768-201) 17425881-17425954 miRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002L3_0001ENSDARG00000070227ENSDART00000109567ENSDARG00000076768ENSDART00000115161CIL_0002L3_0002ENSG00000169891ENST00000303843ENST00000357277ENST00000469714ENST00000470686ENST00000481792ENSG00000188158ENST00000380060ENST00000398097ENST00000485305ENST00000615422ENST00000617601ENSG00000214321ENST00000439415ENSG00000214322ENST00000453841ENSG00000226153ENST00000427102ENSG00000230020ENST00000452788ENSG00000235834ENST00000433228ENSG00000238764ENST00000458802ENSG00000265465ENST00000585270
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002L3_0001ENSDARG00000070227ENSDART00000109567ENSDARG00000076768ENSDART00000115161CIL_0002L3_0002ENSG00000169891ENST00000303843ENST00000357277ENST00000469714ENSG00000188158ENST00000380060ENST00000398097ENST00000485305ENST00000615422ENST00000617601ENSG00000214321ENST00000439415ENSG00000214322ENST00000453841ENSG00000226153ENST00000427102ENSG00000230020ENST00000452788ENSG00000235834ENST00000433228ENSG00000238764ENST00000458802ENSG00000265465ENST00000585270
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000070227 ENSDART00000109567 N/A N/A N/A 1.096±0.00 N/A N/A 0.354±0.13 0.216±0.04 0.024±0.00 N/A 0.072±0.00 N/A N/A N/A
ENSDARG00000076768 ENSDART00000115161 N/A N/A N/A 7.194±1.33 N/A N/A 4.594±1.43 2.575±0.59 0.327±0.00 N/A 2.544±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000169891 ENST00000303843 1.860±0.00 0.172±0.00 0.501±0.00 7.835±2.96 0.240±0.00 1.013±0.00 0.750±0.70 1.177±0.18 0.586±0.00 1.437±0.10 0.246±0.09 0.977±0.46 0.897±0.11 0.695±0.00
ENST00000357277 N/A 0.304±0.00 N/A 2.538±0.27 0.468±0.05 0.665±0.00 0.376±0.00 0.910±0.50 0.789±0.54 0.435±0.00 N/A 0.744±0.15 N/A 2.505±0.00
ENST00000469714 N/A N/A N/A N/A N/A N/A 0.741±0.00 N/A 1.595±0.00 3.616±0.00 N/A N/A 2.241±0.00 N/A
ENST00000470686 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000481792 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000188158 ENST00000380060 0.264±0.00 0.356±0.00 0.851±0.00 0.142±0.04 0.122±0.00 0.215±0.00 0.126±0.00 1.367±0.00 1.445±0.00 0.360±0.04 N/A 0.174±0.08 0.116±0.01 0.472±0.18
ENST00000398097 N/A 0.505±0.00 0.328±0.00 N/A N/A 0.405±0.00 N/A 0.001±0.00 N/A N/A N/A 0.143±0.05 0.269±0.00 1.782±0.00
ENST00000485305 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.662±0.00 N/A N/A N/A N/A
ENST00000615422 N/A N/A 0.328±0.00 N/A N/A N/A N/A N/A 0.266±0.00 0.155±0.00 N/A N/A N/A N/A
ENST00000617601 N/A N/A N/A 0.778±0.00 N/A N/A 0.069±0.00 0.004±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000214321 ENST00000439415 N/A N/A N/A N/A 0.208±0.00 N/A N/A 0.034±0.00 N/A 0.713±0.00 N/A 0.156±0.00 N/A N/A
ENSG00000214322 ENST00000453841 N/A N/A N/A 0.035±0.00 0.062±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000226153 ENST00000427102 N/A N/A 1.707±0.00 0.111±0.00 N/A 0.164±0.00 N/A N/A N/A N/A N/A 0.309±0.00 N/A 0.125±0.06
ENSG00000230020 ENST00000452788 N/A N/A N/A N/A 1.028±0.00 N/A N/A 0.110±0.00 N/A 1.467±0.00 N/A N/A N/A 0.193±0.00
ENSG00000235834 ENST00000433228 N/A 0.016±0.00 0.759±0.00 0.074±0.02 0.206±0.00 0.130±0.00 N/A 0.038±0.00 N/A 0.255±0.00 N/A 0.431±0.00 N/A N/A
ENSG00000238764 ENST00000458802 N/A 0.362±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000265465 ENST00000585270 N/A N/A N/A N/A 3.461±0.00 N/A 1.477±0.00 N/A N/A N/A N/A N/A N/A N/A

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