C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: stabilin 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000388887 STAB2-001 ENSG00000136011 9606 + 12:103587273-103766727 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000388887
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000388887 0.026±0.00 2.033±0.00 0.061±0.00 0.339±0.00 0.131±0.05 0.019±0.00 2.259±2.24 1.901±1.68 0.632±0.55 0.057±0.04 0.221±0.24 0.237±0.08 0.520±0.02

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001525 NAS angiogenesis
GO:0005041 IDA low-density lipoprotein receptor activity
GO:0005044 IDA scavenger receptor activity
GO:0005509 IEA calcium ion binding
GO:0005515 IPI:IEA protein binding
GO:0005540 ISS:IEA hyaluronic acid binding
GO:0005737 IDA cytoplasm
GO:0005886 TAS plasma membrane
GO:0005887 IDA integral component of plasma membrane
GO:0005975 TAS carbohydrate metabolic process
GO:0006897 ISS endocytosis
GO:0006898 TAS receptor-mediated endocytosis
GO:0007155 NAS:IEA cell adhesion
GO:0009897 ISS external side of plasma membrane
GO:0010468 IMP regulation of gene expression
GO:0015035 NAS protein disulfide oxidoreductase activity
GO:0030169 IDA low-density lipoprotein particle binding
GO:0030193 IMP regulation of blood coagulation
GO:0030203 TAS glycosaminoglycan metabolic process
GO:0030212 TAS hyaluronan metabolic process
GO:0030214 TAS hyaluronan catabolic process
GO:0030666 TAS endocytic vesicle membrane
GO:0042742 IDA defense response to bacterium
GO:0044281 TAS small molecule metabolic process
GO:0055114 NAS oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000035288 Stab2-001 protein_coding Mus_musculus 0 6292
ENSMUST00000161560 Stab2-004 nonsense_mediated_decay Mus_musculus 0 2026
ENSMUST00000159118 Stab2-006 retained_intron Mus_musculus 0 329
ENSMUST00000159023 Stab2-007 retained_intron Mus_musculus 0 235

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