C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: STT3A, subunit of the oligosaccharyltransferase complex (catalytic)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000392708 STT3A-001 ENSG00000134910 9606 + 11:125592795-125623091 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000392708
Transcript ID Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000392708 2.936±0.00 3.123±0.00 1.979±0.00 2.303±0.00 3.607±1.58 2.477±0.00 1.415±0.00 0.185±0.00 3.565±0.00 4.049±0.00 5.161±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004576 IEA oligosaccharyl transferase activity
GO:0004579 IMP dolichyl-diphosphooligosaccharide-protein glycotransferase activity
GO:0005515 IPI protein binding
GO:0005789 TAS endoplasmic reticulum membrane
GO:0006486 IEA protein glycosylation
GO:0008250 ISS oligosaccharyltransferase complex
GO:0016020 IDA:IEA membrane
GO:0016021 IEA integral component of membrane
GO:0018279 ISS protein N-linked glycosylation via asparagine
GO:0043686 IMP co-translational protein modification
GO:0043687 TAS post-translational protein modification
GO:0044267 TAS cellular protein metabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000120381 Stt3a-001 protein_coding Mus_musculus 0 3304
ENSDART00000075928 itm1-201 protein_coding Danio_rerio 0 1733
ENSDART00000154144 itm1-001 protein_coding Danio_rerio 0 1622
ENSMUST00000128270 Stt3a-006 nonsense_mediated_decay Mus_musculus 0 503
ENSMUST00000135934 Stt3a-005 protein_coding Mus_musculus 0 457
ENSMUST00000133060 Stt3a-003 protein_coding Mus_musculus 0 442
ENSMUST00000143881 Stt3a-007 retained_intron Mus_musculus 0 333
ENSMUST00000138358 Stt3a-004 retained_intron Mus_musculus 0 248
ENSDART00000144742 si:dkey-57i11.4-001 unprocessed_pseudogene Danio_rerio 9.94922e-44 183
ENSMUST00000137994 Stt3a-002 retained_intron Mus_musculus 4e-38 165
ENSMUST00000116286 Stk40-201 protein_coding Mus_musculus 0.00008 55
ENSMUST00000127092 Stk40-002 processed_transcript Mus_musculus 0.00008 55

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