C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: gamma-aminobutyric acid (GABA) A receptor, beta 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000393959 GABRB2-002 ENSG00000145864 9606 - 5:161288429-161546643 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastHeartLungMuscleOvaryPlacentaENST00000393959
Transcript ID Adipose Bladder Brain Breast Heart Lung Muscle Ovary Placenta
ENST00000393959 0.075±0.00 0.133±0.00 14.886±1.45 0.144±0.00 0.028±0.02 0.341±0.00 0.092±0.03 0.033±0.01 0.005±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004890 ISS GABA-A receptor activity
GO:0005230 IEA extracellular ligand-gated ion channel activity
GO:0005254 ISS chloride channel activity
GO:0005886 TAS plasma membrane
GO:0005887 ISS integral component of plasma membrane
GO:0006810 TAS:IEA transport
GO:0006811 IEA ion transport
GO:0007214 TAS gamma-aminobutyric acid signaling pathway
GO:0007268 TAS synaptic transmission
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0030054 IEA cell junction
GO:0034220 TAS ion transmembrane transport
GO:0034707 IEA chloride channel complex
GO:0045211 IEA postsynaptic membrane
GO:0051932 ISS synaptic transmission, GABAergic
GO:0055085 TAS transmembrane transport
GO:0070062 IDA extracellular vesicular exosome
GO:0071420 ISS cellular response to histamine
GO:1902476 ISS chloride transmembrane transport
GO:1902711 ISS GABA-A receptor complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000007797 Gabrb2-001 protein_coding Mus_musculus 0 1445
ENSMUST00000143626 Gabrb2-002 processed_transcript Mus_musculus 0 739
ENSMUST00000136050 Gabrb2-004 processed_transcript Mus_musculus 0 630
ENSMUST00000140463 Gabrb2-003 processed_transcript Mus_musculus 0 233

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