C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: gamma-aminobutyric acid (GABA) A receptor, subunit beta 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000007797 Gabrb2-001 ENSMUSG00000007653 10090 + 11:42419757-42629028 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000007797
Transcript ID Adipose Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000007797 0.136±0.10 4.835±0.09 0.041±0.01 0.039±0.00 0.010±0.00 0.007±0.00 0.026±0.00 0.013±0.00 0.333±0.14 0.008±0.00 0.021±0.01

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004890 ISS GABA-A receptor activity
GO:0005237 IEA inhibitory extracellular ligand-gated ion channel activity
GO:0005254 ISS chloride channel activity
GO:0005515 IPI protein binding
GO:0005829 IEA cytosol
GO:0005886 IDA plasma membrane
GO:0005887 ISS integral component of plasma membrane
GO:0007165 IEA signal transduction
GO:0007605 IMP sensory perception of sound
GO:0030054 IEA cell junction
GO:0034220 IEA ion transmembrane transport
GO:0034707 IEA chloride channel complex
GO:0043523 IMP regulation of neuron apoptotic process
GO:0043524 IMP negative regulation of neuron apoptotic process
GO:0045211 IEA postsynaptic membrane
GO:0048666 IMP neuron development
GO:0051932 IEA synaptic transmission, GABAergic
GO:0060119 IMP inner ear receptor cell development
GO:0060384 IMP innervation
GO:0070062 IEA extracellular vesicular exosome
GO:0071420 ISS cellular response to histamine
GO:0090102 IMP cochlea development
GO:1901215 IMP negative regulation of neuron death
GO:1902476 ISS chloride transmembrane transport
GO:1902711 ISS GABA-A receptor complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000274547 GABRB2-201 protein_coding Homo_sapiens 0 1666
ENST00000299267 GABRB3-001 protein_coding Homo_sapiens 0 664
ENST00000311550 GABRB3-002 protein_coding Homo_sapiens 0 673
ENST00000353437 GABRB2-001 protein_coding Homo_sapiens 0 2462
ENST00000393959 GABRB2-002 protein_coding Homo_sapiens 0 1445
ENST00000400188 GABRB3-006 protein_coding Homo_sapiens 0 560
ENST00000517547 GABRB2-006 protein_coding Homo_sapiens 0 1570
ENST00000517901 GABRB2-003 protein_coding Homo_sapiens 0 1971
ENST00000520240 GABRB2-004 protein_coding Homo_sapiens 0 2473
ENST00000522758 GABRB2-005 retained_intron Homo_sapiens 0 754
ENST00000541819 GABRB3-003 protein_coding Homo_sapiens 0 664
ENST00000545868 GABRB3-004 protein_coding Homo_sapiens 0 558
ENST00000554556 GABRB3-009 nonsense_mediated_decay Homo_sapiens 0 368
ENST00000555632 GABRB3-012 nonsense_mediated_decay Homo_sapiens 0 558
ENST00000612710 GABRB2-202 protein_coding Homo_sapiens 0 1173
ENST00000622697 GABRB3-201 protein_coding Homo_sapiens 0 558

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