C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger protein 41, E3 ubiquitin protein ligase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000394013 RNF41-002 ENSG00000181852 9606 - 12:56205450-56221909 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000394013
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000394013 9.961±0.00 4.786±0.00 0.807±0.00 7.694±3.64 10.617±0.00 5.434±4.44 1.431±0.00 5.718±0.00 1.339±0.45 6.501±5.44 0.928±0.00 7.985±3.79 8.311±1.00 6.784±1.09

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000209 IDA protein polyubiquitination
GO:0004842 IEA:IDA ubiquitin-protein transferase activity
GO:0005515 IPI:IEA protein binding
GO:0005829 TAS cytosol
GO:0008270 IEA zinc ion binding
GO:0008285 IDA negative regulation of cell proliferation
GO:0010498 IDA proteasomal protein catabolic process
GO:0016567 IEA protein ubiquitination
GO:0016881 IEA acid-amino acid ligase activity
GO:0030336 IMP negative regulation of cell migration
GO:0031386 IEA protein tag
GO:0043408 IDA regulation of MAPK cascade
GO:0051865 IDA protein autoubiquitination
GO:0051896 IDA regulation of protein kinase B signaling
GO:0097191 IDA extrinsic apoptotic signaling pathway
GO:2000377 IMP regulation of reactive oxygen species metabolic process
GO:2000379 IMP positive regulation of reactive oxygen species metabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000096386 Rnf41-201 protein_coding Mus_musculus 0 1437
ENSMUST00000171342 Rnf41-202 protein_coding Mus_musculus 0 1234
ENSMUST00000122221 Gm4772-001 processed_pseudogene Mus_musculus 6e-24 117
ENSMUST00000121507 Gm8761-001 processed_pseudogene Mus_musculus 3e-22 111

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