C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger protein 41
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000171342 Rnf41-202 ENSMUSG00000025373 10090 + 10:128411616-128441438 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonLungOvaryPlacentaTestisENSMUST00000171342
Transcript ID Adrenal Brain Breast Colon Lung Ovary Placenta Testis
ENSMUST00000171342 3.922±0.78 4.822±0.00 1.803±0.00 2.362±0.00 1.749±0.00 9.885±3.21 2.830±0.08 6.628±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000209 ISS protein polyubiquitination
GO:0004842 ISS ubiquitin-protein transferase activity
GO:0005128 IDA erythropoietin receptor binding
GO:0005135 IDA interleukin-3 receptor binding
GO:0005515 IPI protein binding
GO:0005575 ND cellular_component
GO:0008270 IEA zinc ion binding
GO:0010468 IDA regulation of gene expression
GO:0016567 IDA protein ubiquitination
GO:0016881 IEA acid-amino acid ligase activity
GO:0031386 IEA protein tag
GO:0045619 IDA regulation of lymphocyte differentiation
GO:0045637 IDA regulation of myeloid cell differentiation
GO:0051091 IDA positive regulation of sequence-specific DNA binding transcription factor activity
GO:0097191 ISS extrinsic apoptotic signaling pathway
GO:2000114 IDA regulation of establishment of cell polarity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000345093 RNF41-001 protein_coding Homo_sapiens 0 1650
ENST00000394013 RNF41-002 protein_coding Homo_sapiens 0 1234
ENST00000547967 RNF41-005 nonsense_mediated_decay Homo_sapiens 0 723
ENST00000548120 RNF41-008 retained_intron Homo_sapiens 0 610
ENST00000548225 RNF41-003 retained_intron Homo_sapiens 0 396
ENST00000549038 RNF41-011 protein_coding Homo_sapiens 0 1046
ENST00000549119 RNF41-009 nonsense_mediated_decay Homo_sapiens 0 577
ENST00000550379 RNF41-007 retained_intron Homo_sapiens 0 398
ENST00000551711 RNF41-013 protein_coding Homo_sapiens 0 780
ENST00000552244 RNF41-010 protein_coding Homo_sapiens 0 904
ENST00000552656 RNF41-006 protein_coding Homo_sapiens 0 1587
ENST00000615206 RNF41-201 protein_coding Homo_sapiens 0 1602

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