C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chromodomain helicase DNA binding protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000394196 CHD2-201 ENSG00000173575 9606 + 15:92900321-93028003 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000394196
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000394196 7.077±0.00 6.073±0.00 2.377±0.00 6.469±4.11 4.185±2.34 3.762±0.63 4.870±0.00 4.578±0.84 3.572±0.85 5.599±0.52 6.121±0.00 4.954±2.07 5.685±3.11 5.917±1.97

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001046 ISS core promoter sequence-specific DNA binding
GO:0003677 TAS:IEA DNA binding
GO:0004003 TAS ATP-dependent DNA helicase activity
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005634 ISS nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006357 TAS regulation of transcription from RNA polymerase II promoter
GO:0006974 IEA cellular response to DNA damage stimulus
GO:0007517 ISS muscle organ development
GO:0016568 IEA chromatin modification
GO:0032508 TAS DNA duplex unwinding
GO:0042393 ISS histone binding
GO:0044822 IDA poly(A) RNA binding
GO:0060218 IEA hematopoietic stem cell differentiation
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000169922 Chd2-001 protein_coding Mus_musculus 0 8034
ENSMUST00000026895 Chd2-005 protein_coding Mus_musculus 0 665
ENSMUST00000038366 Chd2-004 processed_transcript Mus_musculus 0 577
ENSMUST00000173785 Chd2-003 protein_coding Mus_musculus 0 335
ENSMUST00000172704 Chd2-002 protein_coding Mus_musculus 0 220

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