C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000401578 RP11-296E7.1-001 ENSG00000218418 9606 - 6:80064286-80070199 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000401578
Transcript ID Adipose Bladder Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000401578 0.006±0.00 0.013±0.00 0.028±0.01 0.008±0.00 0.037±0.04 0.009±0.01 0.006±0.00 0.012±0.00 0.006±0.00 0.018±0.01 0.007±0.00 0.242±0.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006G6 CIL_0006G6_0001 CGP 6:80003887-80346270

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000173194 Arhgap21-013 protein_coding Mus_musculus 0 4988
ENSMUST00000154230 Arhgap21-201 protein_coding Mus_musculus 0 4771
ENSMUST00000141298 Arhgap21-012 protein_coding Mus_musculus 0 4771
ENSMUST00000114594 Arhgap21-001 protein_coding Mus_musculus 0 4771
ENSMUST00000174584 Arhgap21-005 nonsense_mediated_decay Mus_musculus 0 3570
ENSMUST00000173784 Arhgap21-018 protein_coding Mus_musculus 0 1304
ENSMUST00000174825 Arhgap21-014 processed_transcript Mus_musculus 0 627
ENSMUST00000154657 Arhgap21-007 retained_intron Mus_musculus 0 599
ENSMUST00000127512 Arhgap21-008 retained_intron Mus_musculus 0 425
ENSMUST00000136241 Arhgap21-009 processed_transcript Mus_musculus 0 363
ENSMUST00000140230 Arhgap21-004 protein_coding Mus_musculus 0 237

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