C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cell adhesion molecule 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000405615 CADM2-001 ENSG00000175161 9606 + 3:85726482-86066783 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastLiverLungMuscleOvaryPlacentaTestisENST00000405615
Transcript ID Brain Breast Liver Lung Muscle Ovary Placenta Testis
ENST00000405615 24.573±0.00 1.672±0.00 1.109±0.00 0.649±0.00 1.245±0.00 0.210±0.13 0.048±0.01 0.097±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00059Y CIL_00059Y_0002 CGP 3:81489699-86074429

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm
GO:0005886 TAS plasma membrane
GO:0007155 IEA cell adhesion
GO:0007420 IEA brain development
GO:0016021 IEA integral component of membrane
GO:0030054 IEA cell junction
GO:0030424 IEA axon
GO:0032809 IEA neuronal cell body membrane
GO:0034329 TAS cell junction assembly
GO:0034332 TAS adherens junction organization
GO:0045202 IEA synapse
GO:0045216 TAS cell-cell junction organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000128168 Cadm2-004 protein_coding Mus_musculus 0 1799
ENSMUST00000120594 Cadm2-003 protein_coding Mus_musculus 0 1718
ENSMUST00000114292 Cadm2-001 protein_coding Mus_musculus 0 1234
ENSMUST00000120898 Cadm2-002 protein_coding Mus_musculus 0 1203
ENSMUST00000141282 Cadm2-006 processed_transcript Mus_musculus 0 538
ENSDART00000090790 cadm2b-001 protein_coding Danio_rerio 0 198

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